Yes, the SEO Audit is available in the cloud version. (a full comparison between the Squirrly plugin and the Squirrly cloud can be seen here)
You can’t export audit reports as pdfs directly from the cloud. However, Squirrly offers you the option to receive the weekly Audit by email separately for each website under your account.
Also, if you are an agency and want each audit to be sent separately to each one of your clients, you can set an email address for each site that you manage.
All you have to do is add the client’s email address in the appropriate field in the Audit Settings and the Audit report will be sent weekly by email to that person. (more details here: – SEO Audits section).